| Time | Adonis (1F) | Geranium (2F) | Lavender (2F) | Rosemary (1F) |
| 08:00 ~ 09:00 | Registration (1F) | |||
| 09:00 ~ 12:00 | Tutorial 1: Machine Learning Presenter: Sangkyun Lee (Hanyang Univ.) |
Tutorial 2: NGS-based Population Genomics Presenter: Namshin Kim (KRIBB) |
AYRCOB | Poster and Exhibition 09:00~ Standing: 15:30 ~ 17:00 (Sun Shim Choi) |
| 12:00 ~ 13:30 | Lunch (on your own) | |||
| 13:30 ~ 13:45 | Openning Ceremony * | |||
| 13:45 ~ 15:30 (105min) | GIW 1 - Biological networks Chair: Hyunjung Shin(Ajou Univ.) |
BIOINFO - Single Cell Omics Chair: Jong Kyoung Kim(DGIST) |
AYRCOB | |
| BTNET: Boosted tree based gene regulatory network inference algorithm using time-course measurement data | High-throughput single cell RNA-sequencing visualizes tumor microenvironment [Speaker] Hae Ock Lee |
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| SPSNet: Subpopulation-sensitive network-based analysis of heterogeneous gene expression data | Somatic mutations reveal asymmetric cellular dynamics in the early human embryo [Speaker] Young Seok Ju |
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| Network-based identification of pathway-specific protein domains and their implications for human diseases | Somatic Mutations in Single Neurons [Speaker] Semin Lee |
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| A homologous mapping method for three-dimensional reconstruction of protein networks reveals disease-associated mutations | Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition [Speaker] Jong Kyoung Kim |
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| Comorbidity Scoring with Causal Disease Networks | ||||
| 15:30 ~ 16:00 | Coffee Break | |||
| 16:00 ~ 17:00 | Keynote Speech I * : Terry Gaarsterland(Univ. of California San Diego) | |||
| 17:00 ~ 18:30 (90min) | GIW 2 - Sequence Analysis, Computational Methods Chair: Seung Moon No(Hongik Univ.) |
BIOINFO - RNA Informatics Chair: Jin Wu Nam(Hanyang Univ.) |
AYRCOB | |
| Introducing difference recurrence relations for faster semi-global alignment of long sequences | Revisit to the notion on neutrality of synonymous codons [Speaker] Sun Shim Choi |
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| MUGAN: Multi-GPU accelerated AmpliconNoise server for rapid microbial diversity assessment | Integrative analysis of genomic and epigenomic regulation of transcriptome in liver cancer [Speaker] Hyun Goo Woo |
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| Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search for Bioinformatics | Differential expression, pathway, and network analysis of RNA-seq data [Speaker] Dougu Nam |
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| GI-Cluster: detecting genomic islands via consensus clustering on multiple features | ||||
| 18:30 ~ | Dinner (on your own) | |||
| Time | Adonis (1F) | Geranium (2F) | Lavender (2F) | Rosemary (1F) |
| 08:00 ~ 09:00 | Registration (1F) | |||
| 09:00 ~ 11:00 (120min) | GIW 3 - Genomic Variants and Mutations Chair: Hong-Hee Won(SAIHST) |
BIOINFO - Cancer Genomics Chair: Tae Min Kim(Catholic Univ.) |
GIW 4 - Proteome Bioinformatics Chair: Sungwon Jung(Gachon Univ.) |
Poster and Exhibition 09:00~ Standing: 15:30 ~ 17:00 (Sun Shim Choi) |
| Mut2Vec: Distributed representation of Cancerous mutations | Utilization of PDX library and cancer genome database for precision oncology [Speaker] Jong-Il Kim |
Revealing dynamic regulations of myeloma ini-tiating cells based on reverse phase protein array data | ||
| EAGLE: Explicit Alternative Genome Likelihood Evaluator | Systematic analysis of cancer omics and phenotypic data for finding synthetic lethal target and biomarker combinations [Speaker] Sukjoon Yoon |
Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer | ||
| Identification of local clusters of mutation hotspots in cancer-related genes and their biological relevance | [Speaker] Hye Ryun Kim |
Improving Prediction of Heterodimeric Protein Complexes Using Combination with Pairwise Kernel | ||
| Comparison of INDEL Calling Tools with Simulation Data and Real Short-Read Data | Application of RNA sequencing data in cancer research [Speaker] Youngil Koh |
PmiRBR: a predictor based on hybrid feature selection using a Laplacian support vector machine and sequence information to improve the reliability of predicting microRNA-binding residues in proteins | ||
| Systematic inspection of clinical relevance in TP53 missense mutations of gastric cancer | Proposing Drug Fragments for Dengue Virus NS5 Protein | |||
| 11:00 ~ 12:00 | Keynote Speech II * : Jin-Soo Kim(Institute for Basic Science, Korea) | |||
| 12:00 ~ 13:30 | Lunch (Luncheon session sponsored by Dasan Data & DELL) | |||
| 13:30 ~ 15:30 (120min) | GIW 5 - Web servers and pipelines Chair: Sael Lee (SUNY Korea) |
BIOINFO - Machine Learning for Bioinformatics Chair: Kyung-Ah Sohn(Ajou Univ.) |
GIW 6 - Genome and Epigenome Analysis Chiar: Namshin Kim(KRIBB) |
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| CAS-viewer: Web-based tool for splicing-guided integrative analysis of multi-omics cancer data | Learning Graphical Structure from High-Dimensional Data using Sorted L1 Regularization [Speaker] Sangkyun Lee |
Better ILP Models for Haplotype Assembly | ||
| An integrated clinical and genomic information system for cancer precision medicine | Network based ML Algorithms of Intra-relation, Integration, and Inter-relation for Diseases-Drugs [Speaker] Hyunjung Shin |
Comparative Analysis of probiotic genus Bifidobacterium and Lactobacillus based on a new definition of core genome | ||
| VITCOMIC2: Visualization tool for the phylogenetics composition of microbial communitites based on 16S rRNA gene amplicons and metagenomic shotgun sequencing | Functional prediction of causal regulatory variants identifies a novel autism gene [Speaker] Jung Kyoon Choi |
Genome-wide prediction of CRISPR/Cas9 targets in Kluyveromyces marxianus and its application to obtain a stable haploid strain | ||
| Closha: Bioinformatics workflow system for analysis of massive sequencing data | Computational analysis of intra-tumor heterogeneity in cancer [Speaker] Je-Gun Joung |
LDSplitDB: A database for studies of meiotic recombination hotspots in MHC using human genomic data | ||
| IMPACT Web Portal: Oncology Database Inte-grating Molecular Profiles with Actionable Therapeutics | Learning Graphical Structure from High-Dimensional Data using Sorted L1 Regularization [Speaker] Sangkyun Lee |
Estimating DNA methylation heterogeneity in bisulfite sequencing data | ||
| 15:30 ~ 16:00 | Coffee Break | |||
| 16:00 ~ 17:00 | Keynote Speech III * : Sean Mooney(Univ. of Washington) | |||
| 17:00 ~ 18:30 (90min) | Poster Session | Preparation for Banquet | Poster Session | |
| 18:30 ~ | Banquet * | |||
| Time | Adonis (1F) | Geranium (2F) | Lavender (2F) | Rosemary (1F) |
| 08:00 ~ 09:00 | Registration (1F) | |||
| 09:00 ~ 11:00 (120min) | GIW 7 - RNA Bioinformatics Chair: Sung Wook Chi(Korea Univ.) |
BIOINFO - Big Data Informatics Supported by Center for Plant Aging Research Chair: Daehee Hwang(DGIST, IBS) |
GIW 8 - Cancer Bioinformatics Chair: Hyun Seok Kim(Yonsei Univ.) |
Poster and Exhibition 09:00~ Standing: 15:30 ~ 17:00 (Sun Shim Choi) |
| The mRNA and miRNA transcriptomic landscape of Panax Ginseng under the high ambient temperature | Big data technology for designing high-quality oligonucleotides without off-target effects [Speaker] Min-Soo Kim |
WISARD: Workbench for Integrated Superfast Association studies for Related Dataset | ||
| TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association | Big Tensor Decomposition Methods towards Integrative Bio-health Data Analysis [Speaker] Sael Lee |
Isoform specific gene expression analysis of KRAS in the prognosis of lung adenocarcinoma patients | ||
| Estimating energy parameters for RNA secondary structure predictions using both experimental and computational data | Biomedical text mining approaches for identifying disease-related genes [Speaker] Hyunju Lee |
BRCA-Pathway: a structural integration and visualization system of TCGA Breast Cancer data on KEGG Pathways | ||
| Tensor Decomposition based Unsupervised Feature Extraction Identified universal nature of Sequence-non-specific Off-target Regulation of mRNA Mediated by microRNA Transfection | Cancer Precision Medicine through Transforming Biomedical Big Data to Actionable Knowledge [Speaker] Jaewoo Kang |
Stage-Dependent Gene Expression Profiling in Colorectal Cancer | ||
| Capturing Alternative Secondary Structures of RNA by Decomposition of Base Pairing Probabilities | MGRFE: multilayer recursive feature elimination based on embedded genetic algorithm for cancer classification | |||
| 11:00 ~ 12:00 | Keynote Speech IV * : Jianfeng Feng(Fudan Univ.) | |||
| 12:00 ~ 13:30 | Lunch (Luncheon session sponsored by KOBIC) | |||
| 13:30 ~ 15:30 (120min) | GIW 9 - Drug Development Chair: Seungyoon Nam (Gacheon Univ.) |
BIOINFO - Precision Medicine Chair: Sangwoo Kim(Yonsei Univ.) |
GIW 10 - Biomarkers Discovery Chair: Sungho Won (Seoul National Univ.) |
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| In Silico Drug Combination Discovery for Personalized Cancer Therapy | Background noises in targeted deep sequencing for liquid biopsy [Speaker] Woong-Yang Park |
Identifying statistically significant combinatorial markers for survival analysis | ||
| A Transfer Learning Approach via Procrustes Analysis and Mean Shift for Cancer Drug Sensitivity Prediction | Rare Disease is a Flagship in Precision Medicine [Speaker] Jong-Hee Chae |
Identifying feature genes from gene expression data by twin kernel method | ||
| Investigation of non-hydroxamate scaffolds against HDAC6 inhibition: A pharmacophore modeling, molecular docking and molecular dynamics simulation approach | Precision Medicine in Untreatable Brain Disorders: Lessons from Intractable Epilepsy [Speaker] Jeong Ho Lee |
Exact Association Test for Small Size Sequencing Data | ||
| Compound Property Enhancer by Virtual Compound Synthesis | Tumor Molecular subtyping for precision cancer medicine [Speaker] Jae-Ho Cheong |
QSurface: Fast identification of surface expression markers in caners (To be presented in BIOINFO session) | ||
| 15:30 ~ 16:00 | Coffee Break | |||
| 16:00 ~ 17:00 | Keynote Speech V * : Shyam Prabhakar(National Univ. of Singapore) | |||
| 17:00 ~ 18:30 (90min) | GIW 11 - Systems Biology & Biological Interactions Chair: So Hyun Hwang(CHA Univ.) |
BIOINFO - Onbit Award Lecture & Young Scientist Award Lectures | GIW 12 - New Computational Methods in Bioinformatics Chair: Hyunju Lee(GIST) |
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| Uncovering the regeneration strategies of zebrafish organs: a comprehensive systems biology study on heart, cerebellum, fin, and retina regeneration | HiComet: A High-Throughput Comet Analysis Tool for Large-Scale DNA Damage Assessment | |||
| Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica | Fuzzy set-based generalized multifactor dimensionality reduction analysis of gene-gene interactions | |||
| GxGrare: Gene-gene interaction analysis for rare variants from NGS data | Chromatin 3D reconstruction from chromosomal contacts using a genetic algorithm | |||
| Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach | Population-based statistical inference for temporal sequence of somatic mutations in cancer genomes | |||
| 18:30 ~ | Dinner (on your own) | |||
| Time | Adonis (1F) | Geranium (2F) | Lavender (2F) | Rosemary (1F) |
| 08:00 ~ 09:00 | Registration (1F) | |||
| 09:00 ~ 11:00 (120min) | BIOINFO - Systems Biology Chair: Wankyu Kim (Ewha Womans Univ.) |
BIOINFO - Structural & Chemoinformatics Chair: Sun Choi (Ewha Womans Univ.) |
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| Systematic approach for predicting pluripotency of stem cells and human chronological age using DNA methylation data [Speaker] Hojung Nam |
Development of nitric oxide synthase (NOS) inhibitors for neurodegeneration and antibiotics [Speaker] Soosung Kang |
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| Network-based augmenting and interpreting disease genomics data [Speaker] Insuk Lee |
Upgrading Tactics of Chemical Library Design for Drug Discovery [Speaker] Inhee Choi |
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| Systems approaches to complex human diseases [Speaker] Daehee Hwang |
Exploration of protein dynamics and intra-molecular signaling pathways for GPCR activation mechanism, and its application to drug discovery [Speaker] Sun Choi |
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| Drug repositioning for cancer therapy based on large-scale drug-induced transcriptional signatures [Speaker] Haeseung Lee |
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| 11:00 ~ 12:00 | Keynote Speech VI * : Sun Kim(Seoul National University, Korea) | |||
| 12:00 ~ 12:30 | Closing Ceremony * | |||